Index

A

Acquisition (class in ctdcast.config.cnv_header) add_processing_level() (in module ctdcast.processors.history) advance (ctdcast.config.cnv_header.DeckUnit attribute) aggregate_identity() (in module ctdcast.config.global_attrs) all_meta (ctdcast.reports._cast.PageCtx attribute) ALL_SCOPE (in module ctdcast.config.people) along_track_km() (in module ctdcast.analysis.geometry) ambiguous_slugs() (in module ctdcast.config.platforms) anchor (ctdcast.config.cnv_header.StartTime attribute)

anchor() (ctdcast.reports._manifest.ResolvedReport method) append_history() (in module ctdcast.processors.history) applies_to (ctdcast.reports._manifest.Section attribute) applies_to() (ctdcast.reports._manifest.Panel method) apply_clock_offset() (in module ctdcast.processors.stage2) apply_curated_drop() (in module ctdcast.processors.stage2) apply_gross_range() (in module ctdcast.processors.qc) apply_spike_test() (in module ctdcast.processors.qc) apply_stage2() (in module ctdcast.processors.stage2) ATTR_GROUPS (in module ctdcast.config.global_attrs)

B

b64 (ctdcast.reports._plots.RenderedPanel attribute) bathy_depths (ctdcast.reports._section.SectionPageCtx attribute)

bathy_x (ctdcast.reports._section.SectionPageCtx attribute) build_correction_ledger() (in module ctdcast.config.cnv_header) build_profiles() (in module ctdcast.processors.profiles)

C

C89_ROLES (in module ctdcast.config.people) cal_value_nondefault() (in module ctdcast.config.cnv_header) canonical_attr_order() (in module ctdcast.config.global_attrs) caption (ctdcast.reports._manifest.Panel attribute) (ctdcast.reports._manifest.ResolvedPanel attribute) CAST_DEFAULT (in module ctdcast.reports._cast) cast_id (ctdcast.analysis.clock.CastClock attribute) cast_id_from_name() (in module ctdcast.identity) cast_labels (ctdcast.reports._section.SectionPageCtx attribute) cast_number() (in module ctdcast.analysis.clock) CAST_PANELS (in module ctdcast.reports._cast) cast_range (ctdcast.analysis.clock.ClockSegment property) CAST_SECTION_COLUMNS (in module ctdcast.reports._cast) CastClock (class in ctdcast.analysis.clock) cfg (ctdcast.reports._cast.PageCtx attribute) (ctdcast.reports._section.SectionPageCtx attribute) (ctdcast.reports._timeseries.TimeseriesPageCtx attribute) changepoints (ctdcast.analysis.clock.ClockVerdict property) check_contributors() (in module ctdcast.config.people) classify_offsets() (in module ctdcast.analysis.clock) clock (ctdcast.config.cnv_header.StartTime attribute) clock_offsets() (in module ctdcast.analysis.clock) Clocks (class in ctdcast.config.cnv_header) clocks (ctdcast.config.cnv_header.Acquisition attribute) ClockSegment (class in ctdcast.analysis.clock) ClockVerdict (class in ctdcast.analysis.clock) compact_cast_list() (in module ctdcast.identity) conformance_advisories() (in module ctdcast.config.cnv_header) CONFORMANCE_MATCH (in module ctdcast.config.cnv_header) conformance_supported() (in module ctdcast.config.cnv_header) conformance_ticks() (in module ctdcast.config.cnv_header) ConformanceTick (class in ctdcast.config.cnv_header) contributor_attrs() (in module ctdcast.config.people) convert_cast() (ctdcast.processors.stage1.CtdBackend method) coordinate_summary() (in module ctdcast.analysis.clock) Correction (class in ctdcast.config.cnv_header) correction_records() (in module ctdcast.config.cnv_header) correction_status() (in module ctdcast.analysis.clock) coverage_attrs() (in module ctdcast.config.global_attrs) CREATION_NOTE (in module ctdcast.config.global_attrs) CREATOR_TYPES (in module ctdcast.config.people) cruise_expocode() (in module ctdcast.config.global_attrs) cruise_global_attrs() (in module ctdcast.config.global_attrs) cruise_name() (in module ctdcast.config.global_attrs) CtdBackend (class in ctdcast.processors.stage1) ctdcast.analysis.bathymetry module ctdcast.analysis.clock module

ctdcast.analysis.derive module ctdcast.analysis.geometry module ctdcast.config.cnv_header module ctdcast.config.global_attrs module ctdcast.config.parameters module ctdcast.config.people module ctdcast.config.platforms module ctdcast.identity module ctdcast.plotters.plots module ctdcast.plotters.primitives module ctdcast.processors.history module ctdcast.processors.profiles module ctdcast.processors.qc module ctdcast.processors.stage1 module ctdcast.processors.stage2 module ctdcast.processors.stage3 module ctdcast.readers.ladcp module ctdcast.readers.metadata module ctdcast.reports._anchors module ctdcast.reports._cast module ctdcast.reports._leaflet module ctdcast.reports._manifest module ctdcast.reports._plots module ctdcast.reports._section module ctdcast.reports._timeseries module

D

data_mode_with_meaning() (in module ctdcast.config.global_attrs) DATA_MODES (in module ctdcast.config.global_attrs) dataset_filename() (in module ctdcast.config.global_attrs) dataset_identity() (in module ctdcast.config.global_attrs) deck_unit (ctdcast.config.cnv_header.Acquisition attribute) DeckUnit (class in ctdcast.config.cnv_header) DEFAULT_INSTITUTION_ROLE (in module ctdcast.config.people) DEFAULT_INSTITUTION_ROLE_VOCABULARY (in module ctdcast.config.people) DEFAULT_ROLE_VOCABULARY (in module ctdcast.config.people) dense_bathy_along_track() (in module ctdcast.analysis.bathymetry) derive_AOU() (in module ctdcast.analysis.derive) derive_CT() (in module ctdcast.analysis.derive) derive_expocode() (in module ctdcast.config.platforms) derive_SA() (in module ctdcast.analysis.derive) derive_salinity() (in module ctdcast.analysis.derive) derive_sigma0() (in module ctdcast.analysis.derive) derive_teos10() (in module ctdcast.analysis.derive) derive_teos10_profiles() (in module ctdcast.analysis.derive) detail (ctdcast.config.cnv_header.ConformanceTick attribute) detect_instrument() (in module ctdcast.config.cnv_header) distance_from_km() (in module ctdcast.analysis.geometry) draw_all_sections_map_fig() (in module ctdcast.plotters.plots) draw_aux_profiles_fig() (in module ctdcast.plotters.plots) draw_clock_offset_fig() (in module ctdcast.plotters.plots)

draw_cruise_map_fig() (in module ctdcast.plotters.plots) draw_ct_sa_sigma0_fig() (in module ctdcast.plotters.plots) draw_ladcp_bottomtrack_fig() (in module ctdcast.plotters.plots) draw_overview_panel_fig() (in module ctdcast.plotters.plots) draw_pressure_time_fig() (in module ctdcast.plotters.plots) draw_qc_histogram_fig() (in module ctdcast.plotters.plots) draw_section_fig() (in module ctdcast.plotters.plots) draw_section_map_fig() (in module ctdcast.plotters.plots) draw_section_ts_histogram_fig() (in module ctdcast.plotters.plots) draw_section_ts_o2_fig() (in module ctdcast.plotters.plots) draw_section_ts_profiles_fig() (in module ctdcast.plotters.plots) draw_sensor_diff_fig() (in module ctdcast.plotters.plots) draw_stability_fig() (in module ctdcast.plotters.plots) draw_station_map_fig() (in module ctdcast.plotters.plots) draw_timeseries_fig() (in module ctdcast.plotters.plots) draw_ts_density_fig() (in module ctdcast.plotters.plots) draw_ts_diagram_fig() (in module ctdcast.plotters.plots) draw_ts_diagram_timeseries_fig() (in module ctdcast.plotters.plots) draw_ts_updown_fig() (in module ctdcast.plotters.plots) draw_updown_diff_fig() (in module ctdcast.plotters.plots) drift_applied (ctdcast.config.cnv_header.SensorCalibration property) ds (ctdcast.reports._cast.PageCtx attribute) ds_sec (ctdcast.reports._section.SectionPageCtx attribute) ds_ts (ctdcast.reports._timeseries.TimeseriesPageCtx attribute)

E

end (ctdcast.analysis.clock.ClockSegment attribute) entries (ctdcast.reports._manifest.Profile attribute) entry_roles() (in module ctdcast.config.people) Expand (class in ctdcast.reports._manifest)

expand_cast_ids() (in module ctdcast.identity) expand_cast_numbers() (in module ctdcast.identity) expocode_from_cruise_info() (in module ctdcast.config.platforms) EXPOCODE_PLACEHOLDER_ICES (in module ctdcast.config.global_attrs)

F

fig_location_b64 (ctdcast.reports._timeseries.TimeseriesPageCtx attribute) figsize (ctdcast.reports._plots.RenderedPanel attribute) find_cast_end() (in module ctdcast.processors.stage2) find_ladcp_file() (in module ctdcast.readers.ladcp) find_soak_end() (in module ctdcast.processors.stage2)

firmware (ctdcast.config.cnv_header.DeckUnit attribute) first_cast (ctdcast.analysis.clock.ClockSegment attribute) forbidden_codes() (in module ctdcast.config.platforms) FORBIDDEN_IN_VALUE (in module ctdcast.config.people) format_cast_id() (in module ctdcast.identity)

G

generate_leaflet_map() (in module ctdcast.reports._leaflet) generate_section_page() (in module ctdcast.reports._section) generate_station_page() (in module ctdcast.reports._cast) generate_timeseries_page() (in module ctdcast.reports._timeseries)

get_ctd_backend() (in module ctdcast.processors.stage1) grid_token() (in module ctdcast.config.global_attrs) GROSS_RANGE_FAIL (in module ctdcast.processors.qc) GROSS_RANGE_SUSPECT (in module ctdcast.processors.qc) group_attrs() (in module ctdcast.config.global_attrs)

H

header_from_raw_metadata() (in module ctdcast.config.cnv_header)

I

id (ctdcast.reports._manifest.Panel attribute) (ctdcast.reports._manifest.ResolvedPanel attribute) (ctdcast.reports._manifest.ResolvedSection attribute) (ctdcast.reports._manifest.Section attribute) identity_attrs() (in module ctdcast.config.global_attrs) institution_registry_paths() (in module ctdcast.config.people) INSTITUTION_ROLE_VOCABULARIES (in module ctdcast.config.people)

institution_role_vocabulary() (in module ctdcast.config.people) institutions_with_source() (in module ctdcast.config.people) interpolate_bathy_at_casts() (in module ctdcast.analysis.bathymetry) intro (ctdcast.reports._manifest.ResolvedSection attribute) (ctdcast.reports._manifest.Section attribute) is_placeholder_expocode() (in module ctdcast.config.global_attrs) is_sbe_channel() (in module ctdcast.config.parameters) is_stub (ctdcast.reports._manifest.ResolvedPanel property)

K

key (ctdcast.config.cnv_header.ConformanceTick attribute) (ctdcast.config.cnv_header.Correction attribute) kind (ctdcast.analysis.clock.ClockVerdict attribute) (ctdcast.config.cnv_header.SensorCalibration attribute) (ctdcast.reports._manifest.Panel attribute) (ctdcast.reports._manifest.ResolvedPanel attribute)

L

label (ctdcast.config.cnv_header.ConformanceTick attribute) (ctdcast.config.cnv_header.Correction attribute) (ctdcast.config.cnv_header.SensorCalibration attribute) ladcp_configured (ctdcast.reports._cast.PageCtx attribute) ladcp_exists (ctdcast.reports._cast.PageCtx attribute) ladcp_panels (ctdcast.reports._section.SectionPageCtx attribute) (ctdcast.reports._timeseries.TimeseriesPageCtx attribute) ladcp_path (ctdcast.reports._cast.PageCtx attribute) last_cast (ctdcast.analysis.clock.ClockSegment attribute) lat (ctdcast.reports._cast.PageCtx attribute) lats (ctdcast.reports._section.SectionPageCtx attribute)

layout (ctdcast.reports._manifest.ResolvedSection attribute) (ctdcast.reports._manifest.Section attribute) legacy_anchor_spans() (in module ctdcast.reports._anchors) LEGACY_ANCHORS (in module ctdcast.reports._anchors) level (ctdcast.reports._manifest.ResolvedSection attribute) (ctdcast.reports._manifest.Section attribute) license_attrs() (in module ctdcast.config.global_attrs) load_gebco() (in module ctdcast.analysis.bathymetry) load_institutions() (in module ctdcast.config.people) load_platforms() (in module ctdcast.config.platforms) lon (ctdcast.reports._cast.PageCtx attribute) lons (ctdcast.reports._section.SectionPageCtx attribute)

M

map_b64 (ctdcast.reports._section.SectionPageCtx attribute) map_panel() (in module ctdcast.plotters.plots) MatField (in module ctdcast.readers.ladcp) mesh_field() (in module ctdcast.plotters.primitives) model (ctdcast.config.cnv_header.DeckUnit attribute) module ctdcast.analysis.bathymetry ctdcast.analysis.clock ctdcast.analysis.derive ctdcast.analysis.geometry ctdcast.config.cnv_header ctdcast.config.global_attrs ctdcast.config.parameters ctdcast.config.people ctdcast.config.platforms ctdcast.identity ctdcast.plotters.plots ctdcast.plotters.primitives ctdcast.processors.history ctdcast.processors.profiles ctdcast.processors.qc ctdcast.processors.stage1 ctdcast.processors.stage2 ctdcast.processors.stage3 ctdcast.readers.ladcp ctdcast.readers.metadata ctdcast.reports._anchors ctdcast.reports._cast ctdcast.reports._leaflet ctdcast.reports._manifest ctdcast.reports._plots ctdcast.reports._section ctdcast.reports._timeseries

module (ctdcast.config.cnv_header.ProcessingStep attribute)

N

n_casts (ctdcast.analysis.clock.ClockSegment attribute) nc_path (ctdcast.reports._cast.PageCtx attribute) nice_colorbar_ticks() (in module ctdcast.plotters.primitives) nmea_dt (ctdcast.config.cnv_header.Clocks attribute) nmea_utc (ctdcast.analysis.clock.CastClock attribute) (ctdcast.config.cnv_header.Clocks attribute)

not_applicable (ctdcast.reports._manifest.ResolvedReport attribute) note (ctdcast.analysis.clock.ClockVerdict attribute) (ctdcast.config.cnv_header.SbeHistoryNote attribute) number (ctdcast.reports._manifest.ResolvedSection attribute) numbering (ctdcast.reports._manifest.Profile attribute)

O

offset (ctdcast.config.cnv_header.SensorCalibration attribute) offset_nondefault (ctdcast.config.cnv_header.SensorCalibration attribute) offset_seconds (ctdcast.analysis.clock.CastClock attribute) (ctdcast.analysis.clock.ClockSegment attribute) (ctdcast.config.cnv_header.Clocks attribute)

orcid_uri() (in module ctdcast.config.people) order_attrs() (in module ctdcast.config.global_attrs) OTHER_GROUP (in module ctdcast.config.global_attrs) over (ctdcast.reports._manifest.Expand attribute) (ctdcast.reports._manifest.PanelGroup attribute)

P

PageCtx (class in ctdcast.reports._cast) Panel (class in ctdcast.reports._manifest) panel (ctdcast.reports._manifest.PanelGroup attribute) PanelGroup (class in ctdcast.reports._manifest) PanelKind (in module ctdcast.reports._manifest) panels (ctdcast.reports._manifest.ResolvedSection attribute) (ctdcast.reports._manifest.Section attribute) parameters (ctdcast.config.cnv_header.Correction attribute) params (ctdcast.config.cnv_header.ProcessingStep attribute) parse_config_date() (in module ctdcast.config.platforms) parse_processing_chain() (in module ctdcast.config.cnv_header) parse_sensor_block() (in module ctdcast.config.cnv_header) parse_sensor_channels() (in module ctdcast.readers.metadata) parse_sensor_info() (in module ctdcast.readers.metadata)

parse_star_block() (in module ctdcast.config.cnv_header) parse_start_time() (in module ctdcast.config.cnv_header) payload (ctdcast.reports._manifest.ResolvedPanel attribute) PL_CONVERTED (in module ctdcast.processors.history) platform_attrs() (in module ctdcast.config.platforms) platform_display_name() (in module ctdcast.config.platforms) PlatformError preload_gebco() (in module ctdcast.analysis.bathymetry) ProcessingChain (class in ctdcast.config.cnv_header) ProcessingStep (class in ctdcast.config.cnv_header) producer (ctdcast.config.cnv_header.Correction attribute) Profile (class in ctdcast.reports._manifest) provenance_advisories() (in module ctdcast.config.cnv_header) provenance_attrs() (in module ctdcast.config.global_attrs)

Q

QARTOD_SUSPECT (in module ctdcast.processors.qc)

R

read_ladcp() (in module ctdcast.readers.ladcp) read_ladcp_cast() (in module ctdcast.readers.ladcp) reference (ctdcast.config.cnv_header.ConformanceTick attribute) render (ctdcast.reports._manifest.Panel attribute) RenderContext (in module ctdcast.reports._manifest) RenderedPanel (class in ctdcast.reports._plots) report() (in module ctdcast.reports._index) resolution_caveat (ctdcast.analysis.clock.ClockVerdict attribute) resolve() (in module ctdcast.reports._manifest) resolve_cast() (in module ctdcast.reports._cast) resolve_institution() (in module ctdcast.config.people) resolve_platform() (in module ctdcast.config.platforms) resolve_platform_spec() (in module ctdcast.config.platforms) resolve_section() (in module ctdcast.reports._section)

resolve_sensor_var() (in module ctdcast.config.parameters) resolve_timeseries() (in module ctdcast.reports._timeseries) ResolvedPanel (class in ctdcast.reports._manifest) ResolvedReport (class in ctdcast.reports._manifest) ResolvedSection (class in ctdcast.reports._manifest) role (ctdcast.reports._manifest.ResolvedSection attribute) (ctdcast.reports._manifest.Section attribute) role_choices() (in module ctdcast.config.people) ROLE_VOCABULARIES (in module ctdcast.config.people) role_vocabulary() (in module ctdcast.config.people) run() (in module ctdcast.processors.profiles) (in module ctdcast.processors.stage1) (in module ctdcast.processors.stage2) (in module ctdcast.processors.stage3)

S

sbe_history_notes() (in module ctdcast.config.cnv_header) SBE_PREFIX (in module ctdcast.config.parameters) SbeHistoryNote (class in ctdcast.config.cnv_header) scans_averaged (ctdcast.config.cnv_header.DeckUnit attribute) sd_seconds (ctdcast.analysis.clock.ClockSegment attribute) seasave_version (ctdcast.config.cnv_header.Acquisition attribute) Section (class in ctdcast.reports._manifest) section (ctdcast.reports._manifest.Expand attribute) SECTION_BIOGEO_VARS (in module ctdcast.config.parameters) SECTION_DEFAULT (in module ctdcast.reports._section) section_figsize (ctdcast.reports._section.SectionPageCtx attribute) section_figsize_and_slot() (in module ctdcast.plotters.plots) section_name (ctdcast.reports._section.SectionPageCtx attribute) section_orientation() (in module ctdcast.analysis.geometry) SECTION_PANELS (in module ctdcast.reports._section) SECTION_PHYSICS_VARS (in module ctdcast.config.parameters) section_slot_key (ctdcast.reports._section.SectionPageCtx attribute) section_style (ctdcast.reports._section.SectionPageCtx attribute) (ctdcast.reports._timeseries.TimeseriesPageCtx attribute) SectionPageCtx (class in ctdcast.reports._section) sections (ctdcast.reports._manifest.ResolvedReport attribute) segments (ctdcast.analysis.clock.ClockVerdict attribute) select_best_available() (in module ctdcast) sensor_calibrations() (in module ctdcast.config.cnv_header) sensor_info (ctdcast.reports._cast.PageCtx attribute) SensorCalibration (class in ctdcast.config.cnv_header) SEPARATOR (in module ctdcast.config.people)

serial (ctdcast.config.cnv_header.SensorCalibration attribute) short (ctdcast.reports._plots.RenderedPanel attribute) sigma0_isopycnals() (in module ctdcast.plotters.primitives) slope (ctdcast.config.cnv_header.SensorCalibration attribute) slope_nondefault (ctdcast.config.cnv_header.SensorCalibration attribute) slot (ctdcast.reports._manifest.Panel attribute) (ctdcast.reports._manifest.ResolvedPanel attribute) (ctdcast.reports._plots.RenderedPanel attribute) source (ctdcast.config.cnv_header.ConformanceTick attribute) (ctdcast.config.cnv_header.StartTime attribute) source_to_canonical() (in module ctdcast.readers.metadata) SPIKE_FAIL (in module ctdcast.processors.qc) SPIKE_SUSPECT (in module ctdcast.processors.qc) split_cast() (in module ctdcast.processors.stage2) stage (ctdcast.config.cnv_header.SbeHistoryNote attribute) stage1() (in module ctdcast.processors.stage1) stage3() (in module ctdcast.processors.stage3) start (ctdcast.analysis.clock.ClockSegment attribute) start_time_clock() (in module ctdcast.config.cnv_header) StartTime (class in ctdcast.config.cnv_header) state (ctdcast.config.cnv_header.ConformanceTick attribute) steps (ctdcast.config.cnv_header.ProcessingChain attribute) stub_reason (ctdcast.reports._manifest.ResolvedPanel attribute) suggested_config_yaml() (in module ctdcast.analysis.clock) system_dt (ctdcast.config.cnv_header.Clocks attribute) system_upload (ctdcast.config.cnv_header.Clocks attribute) system_utc (ctdcast.analysis.clock.CastClock attribute) (ctdcast.config.cnv_header.Clocks attribute)

T

TIMESERIES_DEFAULT (in module ctdcast.reports._timeseries) TIMESERIES_PANELS (in module ctdcast.reports._timeseries) TimeseriesPageCtx (class in ctdcast.reports._timeseries) timestamp (ctdcast.config.cnv_header.SbeHistoryNote attribute) title (ctdcast.reports._manifest.ResolvedSection attribute) (ctdcast.reports._manifest.Section attribute) (ctdcast.reports._plots.RenderedPanel attribute)

ts_figw (ctdcast.reports._timeseries.TimeseriesPageCtx attribute) ts_panels (ctdcast.reports._section.SectionPageCtx attribute) (ctdcast.reports._timeseries.TimeseriesPageCtx attribute) ts_slot_key (ctdcast.reports._timeseries.TimeseriesPageCtx attribute)

U

unavailable_if() (ctdcast.reports._manifest.Panel method)

unit_colorbar() (in module ctdcast.plotters.primitives)

V

value (ctdcast.config.cnv_header.StartTime attribute) variables (ctdcast.config.cnv_header.ConformanceTick attribute) verbatim (ctdcast.config.cnv_header.Acquisition attribute) (ctdcast.config.cnv_header.ProcessingChain attribute) version (ctdcast.config.cnv_header.Correction attribute) (ctdcast.config.cnv_header.SbeHistoryNote attribute)

vlabel() (in module ctdcast.config.parameters) vlabel_html() (in module ctdcast.config.parameters) vmax (ctdcast.reports._section.SectionPageCtx attribute) (ctdcast.reports._timeseries.TimeseriesPageCtx attribute) vmin (ctdcast.reports._section.SectionPageCtx attribute) (ctdcast.reports._timeseries.TimeseriesPageCtx attribute) vunit() (in module ctdcast.config.parameters)

X

x_label (ctdcast.reports._section.SectionPageCtx attribute)

x_vals (ctdcast.reports._section.SectionPageCtx attribute)