Index

A

animate_hodograph() (in module oceanarray.plotters.animation) apply_adcp_seabed_qc() (in module oceanarray.processors.coordinate) apply_adcp_surface_qc() (in module oceanarray.processors.coordinate) apply_adcp_velocity_qc() (in module oceanarray.processors.coordinate) apply_beam_to_enu() (in module oceanarray.processors.coordinate)

apply_declination_to_enu() (in module oceanarray.processors.coordinate) apply_defaults() (in module oceanarray.utilities) apply_enu_velocity_qc() (in module oceanarray.processors.qc) apply_qc_tests() (in module oceanarray.processors.qc) apply_tilt_qc() (in module oceanarray.processors.qc)

B

build_climatology() (in module oceanarray.tools.rapid_interp)

C

calc_ds_difference() (in module oceanarray.analysis.hydrographic) calc_psal() (in module oceanarray.analysis.hydrographic) cast_output_dtypes() (in module oceanarray.utilities) check_necessary_variables() (in module oceanarray.utilities) CMAPS_BY_VARIABLE (in module oceanarray.config.parameters)

colorbar_norm() (in module oceanarray.plotters.primitives) compute_adcp_bin_pressure() (in module oceanarray.processors.pressure) compute_cwt() (in module oceanarray.analysis.spectral) compute_salinity_data() (in module oceanarray.processors.qc) concat_with_scalar_vars() (in module oceanarray.utilities) COORDS_TO_REMOVE (oceanarray.processors.stage1.MooringProcessor attribute)

D

date_axis() (in module oceanarray.plotters.primitives) date_offset_left() (in module oceanarray.plotters.primitives) derive_oxygen_saturation() (in module oceanarray.processors.qc) detect_deployment_window() (in module oceanarray.processors.stage2) distinct_line_styles() (in module oceanarray.plotters.helpers) downsample_to_sparse() (in module oceanarray.analysis.temporal) draw_adcp_hodograph() (in module oceanarray.plotters.current) draw_adcp_rose() (in module oceanarray.plotters.current) draw_adcp_velocity() (in module oceanarray.plotters.current) draw_analog_timeseries() (in module oceanarray.plotters.timeseries) draw_data_histogram() (in module oceanarray.plotters.diagnostic) draw_grid_fig() (in module oceanarray.plotters.timeseries) draw_grid_hodograph() (in module oceanarray.plotters.current) draw_grid_hydro() (in module oceanarray.plotters.timeseries) draw_grid_n2() (in module oceanarray.plotters.timeseries) draw_grid_rose() (in module oceanarray.plotters.current) draw_grid_rotary_spectrum() (in module oceanarray.plotters.spectrum)

draw_grid_sigma() (in module oceanarray.plotters.timeseries) draw_grid_timeseries() (in module oceanarray.plotters.timeseries) draw_grid_trajectory() (in module oceanarray.plotters.current) draw_grid_ts_diagram() (in module oceanarray.plotters.ts) draw_grid_velocity_stacked() (in module oceanarray.plotters.timeseries) draw_instrument_rose() (in module oceanarray.plotters.current) draw_isopycnal_coverage() (in module oceanarray.plotters.hydrography) draw_isopycnal_ts_fig() (in module oceanarray.plotters.hydrography) draw_overflow_temperature_fig() (in module oceanarray.plotters.hydrography) draw_rose_grid() (in module oceanarray.plotters.current) draw_spectrum() (in module oceanarray.plotters.spectrum) draw_stack_ts_diagram() (in module oceanarray.plotters.ts) draw_ts_diagram() (in module oceanarray.plotters.ts) draw_velocity_iqr_profile() (in module oceanarray.plotters.diagnostic) draw_wavelet() (in module oceanarray.plotters.spectrum) draw_windows() (in module oceanarray.plotters.diagnostic) drop_all_zero_vars() (in module oceanarray.utilities)

E

ensure_conductivity_units() (in module oceanarray.processors.qc)

extract_inline_instruments() (in module oceanarray.utilities) extrapolate_boundary() (in module oceanarray.tools.rapid_interp)

F

figure_title() (in module oceanarray.plotters.primitives) filter_sigma_tukey() (in module oceanarray.analysis.temporal) find_best_dtype() (in module oceanarray.utilities) find_cold_entry_exit() (in module oceanarray.analysis.hydrographic)

flag_salinity_outliers() (in module oceanarray.analysis.science) flag_temporal_spikes() (in module oceanarray.analysis.science) flag_vertical_inconsistencies() (in module oceanarray.analysis.science) format_latlon() (in module oceanarray.utilities)

G

get_dims() (in module oceanarray.utilities) get_time_key() (in module oceanarray.utilities) gonella_rotary_spectrum() (in module oceanarray.analysis.spectral)

grid() (oceanarray.processors.grid.MooringGridder method) grid_despine() (in module oceanarray.plotters.helpers) GRID_PANEL_ROW_IN (in module oceanarray.config.parameters)

H

hodograph_panel() (in module oceanarray.plotters.primitives)

I

interp_pressure() (in module oceanarray.processors.pressure) interp_pressure_for_hab() (in module oceanarray.processors.pressure) interpolate_internal() (in module oceanarray.tools.rapid_interp) interpolate_pressure() (in module oceanarray.processors.pressure)

interpolate_profiles() (in module oceanarray.tools.rapid_interp) is_iso8601_utc() (in module oceanarray.utilities) iso8601_duration_from_seconds() (in module oceanarray.utilities) isopycnal_dataset() (in module oceanarray.analysis.hydrographic) isopycnal_pressure_series() (in module oceanarray.analysis.hydrographic)

L

lag_correlation() (in module oceanarray.analysis.temporal) LegacyLayoutError level (oceanarray.config.validation.ValidationIssue attribute)

LINE_CMAPS_BY_VARIABLE (in module oceanarray.config.parameters) load_dataset() (in module oceanarray.tools.readers) load_nortek_csv() (in module oceanarray.tools.readers) load_qc_config() (in module oceanarray.processors.qc)

M

merge_salinity_parent_qc() (in module oceanarray.processors.qc) message (oceanarray.config.validation.ValidationIssue attribute) module oceanarray.analysis.hydrographic oceanarray.analysis.science oceanarray.analysis.spectral oceanarray.analysis.temporal oceanarray.analysis.vector oceanarray.config.parameters oceanarray.config.validation oceanarray.paths oceanarray.plotters.animation oceanarray.plotters.current oceanarray.plotters.diagnostic oceanarray.plotters.helpers oceanarray.plotters.hydrography oceanarray.plotters.primitives oceanarray.plotters.spectrum oceanarray.plotters.timeseries oceanarray.plotters.ts oceanarray.processors oceanarray.processors.caldip oceanarray.processors.coordinate oceanarray.processors.grid oceanarray.processors.helpers oceanarray.processors.pressure oceanarray.processors.qc oceanarray.processors.stack oceanarray.processors.stage1 oceanarray.processors.stage2 oceanarray.processors.stage3 oceanarray.tools.rapid_interp oceanarray.tools.readers oceanarray.tools.writers oceanarray.utilities

mooring_proc_dir() (in module oceanarray.paths) MooringGridder (class in oceanarray.processors.grid) MooringProcessor (class in oceanarray.processors.stage1) MooringStacker (class in oceanarray.processors.stack)

N

name (oceanarray.processors.Stage attribute)

nice_colorbar_ticks() (in module oceanarray.utilities) number (oceanarray.processors.Stage attribute)

O

oceanarray.analysis.hydrographic module oceanarray.analysis.science module oceanarray.analysis.spectral module oceanarray.analysis.temporal module oceanarray.analysis.vector module oceanarray.config.parameters module oceanarray.config.validation module oceanarray.paths module oceanarray.plotters.animation module oceanarray.plotters.current module oceanarray.plotters.diagnostic module oceanarray.plotters.helpers module oceanarray.plotters.hydrography module oceanarray.plotters.primitives module oceanarray.plotters.spectrum module oceanarray.plotters.timeseries module oceanarray.plotters.ts module

oceanarray.processors module oceanarray.processors.caldip module oceanarray.processors.coordinate module oceanarray.processors.grid module oceanarray.processors.helpers module oceanarray.processors.pressure module oceanarray.processors.qc module oceanarray.processors.stack module oceanarray.processors.stage1 module oceanarray.processors.stage2 module oceanarray.processors.stage3 module oceanarray.tools.rapid_interp module oceanarray.tools.readers module oceanarray.tools.writers module oceanarray.utilities module OKABE_ITO (in module oceanarray.plotters.helpers) ordered_line_colors() (in module oceanarray.plotters.helpers)

P

parse_latlon() (in module oceanarray.utilities) parse_latlon_with_source() (in module oceanarray.utilities) pcolormesh_panel() (in module oceanarray.plotters.primitives) period_axis_ticks() (in module oceanarray.utilities) plot_adcp_trajectories() (in module oceanarray.plotters.current) plot_aquadopp_speed_profile() (in module oceanarray.plotters.current) plot_climatology() (in module oceanarray.tools.rapid_interp) plot_clock_offset_check() (in module oceanarray.plotters.diagnostic) plot_hodograph() (in module oceanarray.plotters.current) plot_knockdown_anomaly() (in module oceanarray.plotters.diagnostic) plot_knockdown_displacement() (in module oceanarray.plotters.diagnostic) plot_knockdown_hab() (in module oceanarray.plotters.diagnostic) plot_knockdown_pressure() (in module oceanarray.plotters.diagnostic) plot_multi_aquadopp_trajectories() (in module oceanarray.plotters.current)

plot_speed_boxplot() (in module oceanarray.plotters.current) plot_temperature_trajectory() (in module oceanarray.plotters.current) plot_title() (in module oceanarray.plotters.primitives) plot_trajectory() (in module oceanarray.plotters.primitives) pressure_axis() (in module oceanarray.plotters.primitives) print_validation_report() (in module oceanarray.config.validation) process() (in module oceanarray.processors) process_dataset() (in module oceanarray.analysis.science) process_mooring() (oceanarray.processors.grid.TimeGriddingProcessor method) (oceanarray.processors.stage1.MooringProcessor method) (oceanarray.processors.stage2.Stage2Processor method) (oceanarray.processors.stage3.Stage3Processor method) process_multiple_moorings_time_gridding() (in module oceanarray.processors.grid) progressive_vector() (in module oceanarray.analysis.vector)

R

raw_mooring_dir() (in module oceanarray.paths) require_current_layout() (in module oceanarray.paths) resolve_report_dir() (in module oceanarray.paths)

resolve_stage() (in module oceanarray.processors) rodbload_old() (in module oceanarray.tools.readers) run (oceanarray.processors.Stage attribute) run_qc() (in module oceanarray.analysis.science)

S

safe_serial() (in module oceanarray.paths) save_climatology() (in module oceanarray.tools.rapid_interp) save_dataset() (in module oceanarray.tools.writers) save_OS_instrument() (in module oceanarray.tools.writers) scope (oceanarray.processors.Stage attribute) set_qc_attrs() (in module oceanarray.processors.qc) should_skip_regeneration() (in module oceanarray.utilities) smooth_climatology() (in module oceanarray.tools.rapid_interp) spacing() (in module oceanarray.tools.rapid_interp)

split_value() (in module oceanarray.analysis.temporal) square_axes_grid() (in module oceanarray.plotters.primitives) square_limits() (in module oceanarray.plotters.primitives) stack() (oceanarray.processors.stack.MooringStacker method) Stage (class in oceanarray.processors) Stage2Processor (class in oceanarray.processors.stage2) Stage3Processor (class in oceanarray.processors.stage3) stage_output_name() (in module oceanarray.paths) STAGES (in module oceanarray.processors) SUPPORTED_FILE_TYPES (oceanarray.processors.stage1.MooringProcessor attribute)

T

time_gridding_mooring() (in module oceanarray.processors.grid)

TimeGriddingProcessor (class in oceanarray.processors.grid) tukey_smooth() (in module oceanarray.plotters.helpers)

U

unify_velocity_qc() (in module oceanarray.processors.qc)

unit_colorbar() (in module oceanarray.plotters.primitives)

V

validate_mooring_yaml() (in module oceanarray.config.validation) ValidationIssue (class in oceanarray.config.validation) var_color() (in module oceanarray.config.parameters) VAR_COLOR_DEFAULT (in module oceanarray.config.parameters)

VAR_COLORS (in module oceanarray.config.parameters) VARIABLES (in module oceanarray.config.parameters) VARS_TO_REMOVE (oceanarray.processors.stage1.MooringProcessor attribute) vlabel() (in module oceanarray.config.parameters) vunit() (in module oceanarray.config.parameters)

W

wavelet_panel() (in module oceanarray.plotters.spectrum)

welch_psd() (in module oceanarray.analysis.spectral) welch_psd_gapaware() (in module oceanarray.analysis.spectral)

X

xyz_to_enu() (in module oceanarray.processors.coordinate)

xyz_to_enu_2d() (in module oceanarray.analysis.vector)

Y

ytick_reserve_in() (in module oceanarray.plotters.primitives)